PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471161
Common NameARALYDRAFT_471161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 206aa    MW: 22892.4 Da    PI: 9.596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055676323
             ETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
             C++Cgk F ++  L  H++ H
   471161 56 CQYCGKEFANSQALGGHQNAH 76
             ******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.5725481IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-65481No hitNo description
Gene3DG3DSA:3.30.160.609.7E-55580IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSRTGESSSG SSSDKTIKLF GFDLISGNRS PEITTAESVS SSTNTTSLTV IKRLDCQYCG  60
KEFANSQALG GHQNAHKKER LKKKRLQLQA RRASIGYYLT SHQQPITTSF QRQYNTPSYC  120
AFSSMHVNNN QMGVYNEEWS SRSSQISFGN KDTCQDLNEQ SGEMGKLYGV RPNMIQFQRD  180
LTSRSDQMRS IKSLDLHLGF AGDSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934460.0AB493446.1 Arabidopsis thaliana At1g10480 mRNA for hypothetical protein, partial cds, clone: RAAt1g10480.
GenBankAC0070670.0AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankATHZFPE0.0L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds.
GenBankAY0863020.0AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence.
GenBankBT0248400.0BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889811.11e-153zinc finger protein 5, ZFP5
SwissprotQ392641e-120ZFP5_ARATH; Zinc finger protein 5
TrEMBLD7KKR81e-153D7KKR8_ARALL; Zinc finger protein 5, ZFP5
STRINGfgenesh2_kg.1__1115__AT1G10480.11e-152(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-108zinc finger protein 5